Generate a knee plot A knee plot to show total number of total read counts for each gene in a given treatment group

Generate a knee plot A knee plot to show total number of total read counts for each gene in a given treatment group

Usage

plot_gene_ranks(
  data = NULL,
  group_by = NULL,
  samples = NULL,
  scale_y_log = TRUE
)

Arguments

data

A tidyseurat object merged with metadata. Must contain columns "Well_ID", "Row", "Column".

group_by

A column that specifies the treatment group in the input data

samples

Treatment group

scale_y_log

Boolean statement for log transformation

Examples

data("mini_mac")
p <- plot_gene_ranks(mini_mac,group_by = "combined_id", 
samples = "Staurosporine_10", scale_y_log = TRUE)