Peter Mac Internal Nextflow Workshops
These workshops are designed to provide participants with a foundational understanding of Nextflow and nf-core pipelines. Participants are expected to have prior experience with the command-line interface and working with cluster systems like Slurm. The primary goal of the workshop is to equip researchers with the skills needed to use nextflow and nf-core pipelines for their research data.
Course Developers & Maintainers
- Richard Lupat, Bioinformatics Core Facility
- Miriam Yeung, Cancer Genomics Translational Research Centre
- Song Li, Bioinformatics Core Facility
- Sanduni Rajapaksa, Research Computing Facility
Current and Future Workshop Sessions
| Lesson | Overview | Date |
|---|---|---|
| Basic to Create a Nextflow Workflow | Introduction to developing bioinformatics workflow with Nextflow (Part1) | 29th May 2024 |
| Developing Modularised Workflows | Introduction to developing bioinformatics workflow with Nextflow (Part2) | 5th Jun 2024 |
| Working with nf-core Templates | Introduction to developing bioinformatics workflow with Nextflow (Part3) | 12th Jun 2024 |
| Working with Nextflow Built-in Functions | Introduction to developing bioinformatics workflow with Nextflow (Part4) | 19th Jun 2024 |
Past Workshop Sessions
| Session | Overview | Date |
|---|---|---|
| Introduction to Nextflow and running nf-core workflows | Introduction to Nextflow: Introduce nextflow’s core features and concepts + nf-core + how to run it at PeterMac | 22nd Nov 2023 |
| Introduction to Nextflow and running nf-core workflows | (Re-run) Introduction to Nextflow: Introduce nextflow’s core features and concepts + nf-core + how to run it at PeterMac | 15th May 2024 |
Credits and acknowledgement
This workshop is adapted from Customising Nf-Core Workshop materials from Sydney Informatics Hub