Intro to Nextflow Workshop
These workshops are designed to provide participants with a foundational understanding of Nextflow and nf-core pipelines. Participants are expected to have prior experience with the command-line interface and working with cluster systems like Slurm. The primary goal of the workshop is to equip researchers with the skills needed to use nextflow and nf-core pipelines for their research data.
Course Developers & Maintainers
Collaborative workshop between Peter Mac, Melbourne Bioinformatics, and WEHI
- Song Li, Bioinformatics Core Facility, Peter Mac
- Richard Lupat, Bioinformatics Core Facility, Peter Mac
- Miriam Yeung, Cancer Genomics Translational Research Centre, Peter Mac
- Sanduni Rajapaksa, Research Computing Facility, Peter Mac
Workshop Sessions
| Lesson | Overview | Date |
|---|---|---|
| Introduction to Nextflow and running nf-core workflows | Introduction to Nextflow: Introduce nextflow’s core features and concepts + nf-core | 28th May 2025 |
| Working with nf-core Templates | Introduction to developing bioinformatics workflow with Nextflow (Part2) | 29th May 2025 |
Credits and acknowledgement
This workshop is adapted from various nextflow training materials, including: